Grant Information

MITIGATING HIGH CONSEQUENCE DOMESTIC, EXOTIC, AND EMERGING DISEASES OF FRUITS, VEGETABLES, AND ORNAMENTALS

Sponsoring Institution Agricultural Research Service/USDA
Status COMPLETE
Funding Source USDA INHOUSE
Reporting Frequency Annual
Project Director ADKINS S T
Accession Number 431483
Project Number 6034-22000-042-000D
Dates 2017-03-21 - 2022-03-20
Recipient Organization AGRICULTURAL RESEARCH SERVICE
219 SOUTH ROCK ROAD
FT PIERCE,FL 34945
Keywords aphid
asian
bacteria
bioassays
biological
canker
chemical
chlorosis
citrus
closterovirus
control
cpp-ata
crop
crops
ctlv
ctv
cucurbit
damage
disease
ecology
emerging
endemic
epidemiology
fungi
geminivirus
genetics
genomics
grapefruit
greening
hlb
host
huanglongbing
ipm
leaf
leprosis
management
methods
microbial
molecular
monitoring
nematodes
nursery
orange
pathogen
pepper
phytophthora
plant
plum
pox
production
psyllid
rapid
relationships
resistance
sharpshooter
species
spot
spotted
spread
strawberry
thrips
tomato
tospovirus
tristeza
variegated
vectors
viroids
virulence
virus
whitefly
wilt
Research Effort Applied (30%)
Basic (60%)
Developmental (10%)
Classification Parameters
Knowledge AreaSubject of InvestigationField of SciencePercent
212 - Pathogens and Nematodes Affecting Plants 910 - Grapefruit 1040 - Molecular biology 25%
212 - Pathogens and Nematodes Affecting Plants 920 - Orange 1060 - Biology (whole systems) 25%
212 - Pathogens and Nematodes Affecting Plants 1114 - Peach 1040 - Molecular biology 10%
212 - Pathogens and Nematodes Affecting Plants 1122 - Strawberry 1060 - Biology (whole systems) 10%
212 - Pathogens and Nematodes Affecting Plants 1429 - Cucurbits, other (includes pumpkin, squash, gourd) 1040 - Molecular biology 10%
212 - Pathogens and Nematodes Affecting Plants 1460 - Tomato 1060 - Biology (whole systems) 10%
212 - Pathogens and Nematodes Affecting Plants 2110 - Ornamental trees and shrubs 1040 - Molecular biology 10%
Goals / Objectives
  1. Develop a risk-based index to analyze potential emerging pathogens/pests to identify those with greatest negative impact on agriculture to guide future research.
  2. Characterize ecology, biology, epidemiology, genetics, and vector and host (crop and weed) interactions of exotic, newly emerging, re-emerging, and domestic pathogens.
    1. Characterize the basic biology, molecular biology and genetics of 'Candidatus Liberibacter asiaticus (Las),' the bacterium associated with citrus huanglongbing (HLB), and molecular mechanisms of host resistance/tolerance to Las infection.
    2. Characterize the basic biology, molecular biology, vector interactions and/or epidemiology of Tomato chlorotic spot virus (TCSV) and other tospoviruses, Squash vein yellowing virus (SqVYV), ilarviruses and other viruses of vegetables, ornamentals, and weeds, and Xanthomonas fragariae [causing angular leaf spot (ALS) on strawberry].
    3. Characterize meteorological components affecting the epidemiology of Asiatic citrus canker (ACC), and the interactions of the Asian leaf miner with ACC, citrus black spot (CBS), the Asian citrus psyllid with HLB, the interaction of thrips with TSV.
  3. Develop/refine and deliver rapid, sensitive reliable detection/sampling methods for high consequence/economic limiting pathogens, including but not limited to citrus canker, huanglongbing, black spot, plum pox virus, seedborne pathogens, and insect vectored viruses of vegetables and ornamentals.
    1. Develop improved detection methods for tospoviruses, Las and Xanthomonads on citrus and strawberry.
    2. Develop new and augment existing surveillance methods and protocols for HLB and the other newly introduced diseases such as CBS and PPV.
  4. Develop or improve comprehensive integrated disease management strategies to rapidly find and delimit new disease introductions and develop quarantine and control/mitigation/eradication programs for exotic pathogens.
    1. Develop and use stochastic models to test various disease control strategies for citrus and prunus diseases caused by exotic pathogens.
    2. Develop and implement the most efficacious strategies for disease management of HLB, Xanthomonads of citrus and strawberry, CBS, PPV, and viruses of vegetables and ornamentals.
Methods (unparsed)

The overall approach is to thoroughly characterize plant pathogens causing domestic, exotic and emerging diseases at multiple levels: assessment and prioritization of economic, production and political risk; cellular, molecular and/or biochemical levels of host-pathogen-vector interaction; and traditional and newer stochastic epidemiological analysis at regional and plantation levels. New pathogens will be identified and characterized by biological and traditional cultural methods. Recombinant DNA and genomics technologies will be applied to study host-pathogen interactions. Resulting knowledge will be used to develop new detection and sampling methods, and management strategies, for these pathogens.

Methods
The overall approach is to thoroughly characterize plant pathogens causing domestic, exotic and emerging diseases at multiple levels: assessment and prioritization of economic, production and political risk; cellular, molecular and/or biochemical levels of host-pathogen-vector interaction; and traditional and newer stochastic epidemiological analysis at regional and plantation levels. New pathogens will be identified and characterized by biological and traditional cultural methods. Recombinant DNA and genomics technologies will be applied to study host-pathogen interactions. Resulting knowledge will be used to develop new detection and sampling methods, and management strategies, for these pathogens.
Project Timeline Tracking

Outputs

This is the final report for this project.Candidatus Liberibacter asiaticus (Las) in vitro culture was greatly improved with much more consistent results along with the development of semi-selective medium. Las was maintained and propagated in liquid medium for >2 years, and caused Huanglongbing (HLB) via psyllid feeding and citrus inoculation. Selections of citrus seedlings and bud sports were evaluated for HLB resistance/tolerance via graft-based and psyllid inoculations. Resistant/ tolerant selections from greenhouse evaluations were further propagated, and planted in research and commercial grove for field trials where they have been evaluated for 3-4 years. The best new selections have gone through pathogen clean-up by the Florida Division of Plant Industry to be ready for future release. From Las pathogenesis standpoint, ARS scientists at Fort Pierce, Florida, demonstrated that Las 5315 effector induced extreme starch accumulation and chlorosis, typical symptoms of HLB, and revealed that host DEAD-box RNA helicase (DDX3) was targeted by Las5315, and that downregulation of host DDX3 gene was associated with leaf chlorosis. These findings facilitate our understanding of Las pathogenesis and HLB symptom development. Aspects of tissue colonization and population development in different citrus genotypes showed that Las populations peaked within 30 days of tissue colonization and did not increase significantly after this time. Calculations indicated that bacterial populations increased slowly in planta, with a very slow doubling time approaching 48 hours. Transmission of tospoviruses, ilarviruses and squash vein yellowing virus (SqVYV) is continuing to be elucidated. Production scale monitoring of tospoviruses and ilarviruses was investigated. Seeds of fruits from watermelon plants infected with SqVYV were collected for virus testing and seed transmission studies. A novel tobamovirus (Hoya chlorotic spot virus) was isolated from the ornamental crop, Hoya spp., and its biology, host range and genome were characterized. A second novel tobamovirus (Brugmansia latent virus) was identified in another ornamental crop, Brugmansia spp., and its genome was sequenced and characterized with host range ongoing. A viable-cell detection assay for specific detection of living cells of Xanthomonas fragariae (Xf), the cause of strawberry angular leaf spot (ALS) was developed. The assay was used to determine the survival of Xf on the surfaces of 11 materials stored at multiple temperatures and days after inoculation (DAI) to determine the likelihood of those materials serving as source of inoculum for disease. All materials harbored viable bacteria up to 7 DAI when stored at -4°C. Xf survived 270 DAI on cardboard at -4°C. At 20°C, cardboard, cotton balls, cotton t-shirt, and strawberry leaf tissue supported bacterial populations up to 14 DAI. Information from this study can be used to improve sanitation practices for ALS management in strawberry nurseries. In cooperation with industry partners, we are developing technology to identify and map regional distribution of crops on satellite imagery, and produce landscape-level risk maps of whitefly and whitefly-transmitted viruses. Initial testing in southwest Florida showed this to be a good predictor of crop type once the crop has grown sufficiently to be â¿¿seenâ¿