Grant Information
| Knowledge Area | Subject of Investigation | Field of Science | Percent |
|---|---|---|---|
| 202 - Plant Genetic Resources | 999 - Citrus, general/other | 1060 - Biology (whole systems) | 60% |
| 206 - Basic Plant Biology | 999 - Citrus, general/other | 1000 - Biochemistry and biophysics | 40% |
Huanglongbing (HLB) has become the greatest challenge for the US citrus industry. Control of the CLas bacterial pathogen through use of HLB resistant cultivars is widely regarded to be the most practical strategy for long-term control of HLB in the field. Large scale monoculture of a few citrus scion cultivars and low genetic diversity in many commercial citrus rootstocks have exposed the industry to significant HLB damage. Our long-term goal is to introgress the innate HLB resistance present in Australian limes into conventional citrus to produce HLB resistant Australian lime hybrid rootstocks and deploy these HLB resistant hybrids to protect susceptible citrus scions against HLB. The goal of this project is to identify optimal rootstocks with Australian lime genetics that can protect the HLB susceptible scion against CLas. To this end the objectives of this proposal are: 1) Identify the most effective rootstocks with Australian lime genetics for HLB resistance to the scion, 2) Assess the impact of interstocks in protecting scions against HLB and 3) Understand the role of metabolites in the HLB resistance process. Outreach activities to communicate information on the HLB resistant Australian lime hybrids to the stakeholders will be delivered through a multi-pronged approach involving in person extension events, peer reviewed extension publications, podcasts, web and twitter dissemination.
Huanglongbing is considered the most destructive disease in citrus growing regions worldwide and has become the greatest challenge for the US citrus industry. Currently, HLB has no cure. A diverse germplasm that includes the HLB resistance genes present in the Australian lime species will provide a sound base for long term economic sustainability, stabilize acreage, and maintain the livelihood of a substantial number of families in multiple states who directly or indirectly depends on the citrus industry.This proposal focuses on a sustainable approach for long term management of HLB that can be compatible with other basic management strategies. The major goals of this project are:
Objective 1: Identify the most effective rootstocks for HLB resistance to the scion. 1.2.1 Assess HLB resistance in the rootstocks (Dutt). We will propagate single node cuttings from seven HLB resistant selections identified in our breeding prohgram. . Clonally propagated plants will be produced using mist bed cuttings, sized up and the rooted liners will be budded with the HLB susceptible scions. In this study HLB susceptible Valencia sweet orange scions will be budded to each rootstock. Trees will be exposed to CLas infected ACP under a "no choice feeding" regime for one month, following which the trees will be maintained in a temperature controlled greenhouse. Scions will be initially evaluated for the presence of CLas after 6 months of infection and the trees (roots and leaf petioles) will subsequently be evaluated at a 3-monthly interval till the completion of the study at the end of the proposed project. Root health through the production of new feeder roots will be monitored. DNA from both roots and leaf petioles will be extracted and CLas titer quantified using qPCR. Tree health will also be monitored through the evaluation of several physiological parameters (starch content, Total phenolic content (TPC), Proline content, Malondialdehyde (MDA) content in both leaves and roots as well as chlorophyll a, chlorophyll b and total chlorophyll content in the leaves. We will also section scion stem and petiole segments and compare with controls for reduced phloem blockage. Defense gene expression including PR1, PR2, WRKY, disease resistance proteins (RGA2 and DRP), protein kinase activity (LRR-RK and FLS2), a nucleotide binding protein (IFR2), SAMP and a transcription factor (b-Zip) expression will be monitored. Relative gene expression will be analyzed using the 2−ΔΔCt method. The constitutively expressed actin (GenBank accession number DQ675553) and α-tubulin genes (GenBank accession number DQ675550) will be used as internal controls to normalize cDNA among samples. 1.2.2 Understand differential feeding patterns in the rootstocks using Electrical Penetration Graph (EPG) technology (Diepenbrock). We will use a 4-channel AC-DC monitor (EPG Technologies, Inc., Gainesville, FL) applying +1500 mV DC substrate voltage. Data will be acquired using a D1710 AD converter (Akron, OH) using Windaq software at a sampling rate of 100 Hz/channel. Probing behaviors of adult ACP will be evaluated as per published protocols. 1.2.3 Understand ACP attraction/preference and survival (Killiny). Adult ACP will be collected from colonies containing the highest number of newly emerged adults, and host preference will be assessed using a no?choice assay [35]. One hundred psyllids will be vacuum?suctioned into separate 50-mL vials. Subsequently, collection vials will be introduced to the center of a 60×60×90 cm insect cage (#1466CV, BioQuip Products, Rancho Dominguez, CA) containing two plants (an Australian hybrid in one side and the control plant to the other side) randomly placed in the corners of the cage. The number of ACP settling per plant will be recorded by visual observation and the observations will be repeated every 24hours over five consecutive days. The entire experiment will be repeated twice under light or completely dark conditions to investigate whether the settling of ACP is affected by visual and/or olfactory cues. Survival analysis will be carried out using the Kaplan-Meier method using JMP software. P values and χ2 of log-rank and Wilcoxon tests were used for statistical comparisons of survival curves. Objective 2: Assess the impact of interstocks in protecting scions against HLB.2.2.1 Screen interstocks for impact on CLas growth (Batuman and Dutt). 6- to 8-inch-long sticks of the HLB resistant hybrids (from Obj. 1) will be stick grafted onto an HLB susceptible rootstock such as Swingle. These grafted plants will serve as interstocks for 'Valencia' scion. CLas inoculated plants will be monitored frequently for bacterial titer accumulation using qPCR as described in Objective 1.2.2.2. Understand defense gene expression in the HLB susceptible scions (Dutt and Batuman). The genes outlined in Objective 1 will also be monitored in this study. An ELISA protocol will be developed to quantify MaSAMP levels.2.2.3. Monitor interstock trees in stakeholder plots (Batuman, Dutt and Grosser). A subset of the interstock trees will be planted on two stakeholder plots (see enclosed stakeholder letters of support). Surviving greenhouse trees will also be planted out in the field with the same collaborators or others for long term evaluation at the end of the study. CLas will be monitored as outlined before. Measurements of the scion/interstock/rootstock combination will be performed using a digital caliper (Digimatic 500-321 CD-6", Mitutoyo Corporation, Japan.) measuring at three positions on each tree: on the rootstock 2.5 cm below the interstock; in the center of the interstock; and on the scion 2.5 cm above the interstock. Tree height will be measured from the soil line to the tip of the longest branch. Statistical analysis will be performed on all measured growth and disease parameters using JMP® Pro 13 using Tukey's HSD. Multivariate analysis will be performed with JMP® Pro 13 and SAS 9.4 using the CANDISC procedure.Objective 3: Understand the role of metabolites in the HLB resistance process.3.2.1 Elucidate the phloem sap composition of the Australian lime hybrids, 3.2.2 Study the chemical composition of roots and leaves of the hybrid germplasm, 3.2.3 Study the phytohormonal profile of the hybrid germplasm, 3.2.4. Study the volatile composition of the hybrid germplasm and 3.2.5. Study the total phenols and flavonoids of the hybrid germplasm (Killiny). GC-MS will be utilized to quantify the various components of our test population.
Target Audience
The project's outreach efforts disseminate information about strategies to control HLB, as well as updates on the project's advancements, to various stakeholders such as farmers, industry representatives, government regulators at state and federal levels, as well as students and the general public. Batuman et al. Can finger limes help Valencia and Hamlin trees be more tolerant of HLB? Citrus Expo. August 16-17, Tampa, FL Batuman, O. HLB and its management in citrus groves. Presentation to Citrus Advisory Board. June 9, 2023 (Virtual) Batuman O. Citrus Pathology Program for Huanglongbing (HLB) management. Presentation to USDA/Cornell Research Group. June 1, 2023 (Virtual) Batuman, O. IPCs' beneficial effects on citrus diseases and challenges they create. UF-IFAS In-service training to extension Agents. May 3, 2023; Immokalee, FL Batuman, O. Emerging viral diseases of citrus and management of their insect vectors. UF-IFAS In-service training to extension Agents. Mar 28, 2023; Immokalee, FL Batuman, O. Citrus Pathology Program, and Projects. Presentation to specialty crop county extension agents. Apr 27, 2023; Clewiston, FL Batuman, O. Plant pathogens that may exacerbate the HLB effects on citrus trees. UF-IFAS Citrus Seminar Series for citrus stakeholders Jan 10, 2023; Immokalee, FL
Changes / Problems
Nothing Reported
Training & Professional Development
A student intern from Zamorano university in Honduras was invited for a short term 3 month internship. He participated in the detailed evaluation of the Australian lime hybrids. This student also learned the basics of DNA and RNA extraction. He also conducted evaluation of the trees for CaLas titre using real time PCR. One postdoc was trained in experimental design, advising graduate students, presentation,and progress report deveopment.
Dissemination Streams
We routinely disseminate the outcome of our research to interested stakeholders through in-person meetings and presentations.
Next Reporting Steps
Objective 1: We will continue to screen our rootstock trees for HLB by routinely monitoring for CaLas presence using qPCR. Differential gene expression will also be studied in these trees and EPG technology will be used to understand the probing behaviors of adult ACP. Tree health will be monitored through the evaluation of several physiological parameters (starch content, Total phenolic content (TPC), Proline content, Malondialdehyde (MDA) content in both leaves and roots as well as chlorophyll a, chlorophyll b and total chlorophyll content in the leaves.We will complete processing the EPG data and interpreting the trend to understand the biological mechanisms involved in this feeding interaction. Objective 2: HLB infected interstock trees will be continuously monitored for bacterial titer accumulation using qPCR and defense gene expression in the HLB susceptible scions will be recorded. Objective 3: The phloem sap metabolite study will be completed. Additionally, leaf and root metabolites will also be characterized to produce a detailed understanding of the hybrid germplasm.
Target Audience
The project's outreach efforts disseminate information about strategies to control HLB, as well as updates on the project's advancements, to various stakeholders such as farmers, industry representatives, government regulators at state and federal levels, as well as students and the general public. Batuman et al. Can finger limes help Valencia and Hamlin trees be more tolerant of HLB? Citrus Expo. August 16-17, Tampa, FL Batuman, O. HLB and its management in citrus groves. Presentation to Citrus Advisory Board. June 9, 2023 (Virtual) Batuman O. Citrus Pathology Program for Huanglongbing (HLB) management. Presentation to USDA/Cornell Research Group. June 1, 2023 (Virtual) Batuman, O. IPCs' beneficial effects on citrus diseases and challenges they create. UF-IFAS In-service training to extension Agents. May 3, 2023; Immokalee, FL Batuman, O. Emerging viral diseases of citrus and management of their insect vectors. UF-IFAS In-service training to extension Agents. Mar 28, 2023; Immokalee, FL Batuman, O. Citrus Pathology Program, and Projects. Presentation to specialty crop county extension agents. Apr 27, 2023; Clewiston, FL Batuman, O. Plant pathogens that may exacerbate the HLB effects on citrus trees. UF-IFAS Citrus Seminar Series for citrus stakeholders Jan 10, 2023; Immokalee, FL
Changes / Problems
Nothing Reported
Training & Professional Development
A student intern from Zamorano university in Honduras was invited for a short term 3 month internship. He participated in the detailed evaluation of the Australian lime hybrids. This student also learned the basics of DNA and RNA extraction. He also conducted evaluation of the trees for CaLas titre using real time PCR. One postdoc was trained in experimental design, advising graduate students, presentation,and progress report deveopment.
Dissemination Streams
We routinely disseminate the outcome of our research to interested stakeholders through in-person meetings and presentations.
Next Reporting Steps
Objective 1: We will continue to screen our rootstock trees for HLB by routinely monitoring for CaLas presence using qPCR. Differential gene expression will also be studied in these trees and EPG technology will be used to understand the probing behaviors of adult ACP. Tree health will be monitored through the evaluation of several physiological parameters (starch content, Total phenolic content (TPC), Proline content, Malondialdehyde (MDA) content in both leaves and roots as well as chlorophyll a, chlorophyll b and total chlorophyll content in the leaves.We will complete processing the EPG data and interpreting the trend to understand the biological mechanisms involved in this feeding interaction. Objective 2: HLB infected interstock trees will be continuously monitored for bacterial titer accumulation using qPCR and defense gene expression in the HLB susceptible scions will be recorded. Objective 3: The phloem sap metabolite study will be completed. Additionally, leaf and root metabolites will also be characterized to produce a detailed understanding of the hybrid germplasm. <br><br>
<br>What was accomplished under these goals? 1. A) Characterization of the feeding behavior of the adult Asian citrus psyllid, Diaphorina citri (Hemiptera: Liviidae) on finger limes and finger lime hybrids using Electropenetrography (EPG): We characterized the feeding behavior of D. citri on finger lime and four finger lime hybrids (Table 1) and compared it with susceptible Valencia plants using EPG techniques. The main objectives of this study were to determine whether the feeding behavior of D. citri is disturbed on these tolerant hosts, specifically, its ability to reach the phloem; better understand CLas inoculation and transmission; confirm whether traits conferring host plant tolerance to D. citri in finger lime are passed down to hybrids. We hypothesized that frequency and duration of phloem salivation (E1) and ingestion (E2) will be smaller in finger lime and hybrid hosts. We also hypothesized that non-probing events (NP) and xylem ingestion (G) will be performed more frequently on finger lime and hybrid plants. Table 1: Hybrid name, crosses, and recording counts used for SAS analysis Plant name Finger lime hybrids cross # EPG recordings Valencia NA 27 FL Finger lime control 19 PFL1-3 C2-5-12 X Finger lime 20 PFL1-11 5-1-99 X Finger lime 22 PRL1-55 5-1-99 X Round lime 19 Two 4-channel AC-DC monitors were used in DC positive voltage. Both instruments were set to apply 150 mV of DC substrate with an input resistor (Ri) level at 109 ohms. A period of 30 min to 1 hour was used from the time psyllids were removed from the colony and placed on the plants. Recordings were done for 24 hours duration. We chose to measure only the original 6 waveforms (Bonani et al., 2010); non-probing (np), potential drop (pd), mesophyll pathway (C), xylem ingestion (G), phloem salivation (E1) and phloem ingestion (E2).We obtained a total of 107 EPG recordings. Out of the 85 variables calculated by the Ebert program, 21 showed significant differences between the hybrids and the control (Valencia). Higher mean duration of non-probing events (walking) in finger lime (almost 3 times higher) compared to Valencia and hybrids. Lower number of pathway events (C) in finger lime (15 times/recording) compared to Valencia (28/recording) Longer duration of xylem ingestion (G) per recording in fingerlime (32%) compared to Valencia (17%) but no difference was found in the number of G. Lower percentage of the total prob was spent in phloem ingestion (E2) in finger lime and the hybrids (9-12%) compared to Valencia (29%). However, the mean duration of phloem salivation was not significantly different among treatments. We are currently in the process of analyzing the data and interpreting the trend to understand the biological mechanisms involved in this feeding interaction. 1. B) Assessment of finger lime hybrids as rootstocks: Valencia graft take ranged from 40% to 100%, depending on the hybrid. The highest graft take percentage was recorded when MFL1-98 was used as rootstock recording 100% with the clean and infected scions.Valencia' grafted onto this rootstock also showed the highest values of the growths parameters (scion height and diameter and rootstock diameter). 'Valencia' grafted onto MFL1-98 showed enhanced growth and chlorophyll pigments compared with 'Valecia' grafted onto swingle. The highest starch content was observed with 'Valencia grafted onto Swingle and PFL1-11 rootstock. 2) Assessment of finger lime hybrids as interstocks: Finger lime hybrid interstock plants had Swingle as the rootstock and 'Valencia' as the scion.Plants were challenge inoculated by CLas-positive ACPs.We monitored ACP population dynamics on these challenge-inoculated interstocked plants. Results are really interesting as two of the interstocks from above with the least CLas titers (UF SUNLIME & MFL1-98) had the most ACP colonization and population increase, indicating these two are providing substantial CLas control despite the increased ACP pressure on them. 3) Understand the role of metabolites in the HLB resistance process. Finger lime hybrids of along with the parents were analysed. Released VOCs (SPME): The released VOCs were collected from the new shoots (where ACP are usually attracted, colonizes and lays eggs) of each eight different parent types and 10 hybrid types by solid phase microextraction (SPME) fibers. The fiber was the "mixed" fiber (Carboxen/DVB/PDMS) which absorbs a wide range of volatiles. Four replicates of each plant type were sampled. The volatile samples were analyzed by GC-MS in scan mode and 72 chromatograms were obtained (18 x 4). 56 VOCs were detected and peak areas were integrated and used to calculate the percent peak area of each chromatogram. The new shoots used for SPME VOCs were removed immediately after taking their released VOCs. These new shoots were weighed, photographed, and stored at stored at -80 °C for further analysis. Peak areas of SPME samples were normalized by fresh weight (FW). Challenges with 'Ca. Liberibacter asiaticus' and ACP Hot ACP inoculation/reproduction:Beginning in January 2023, groups of three of each parent and hybrid with new shoots (good for insect colonization) were taken to the 'Ca. L. asiaticus'-infected psyllid colony. The order of which plants were taken for ACP inoculation was based on which type was flushing. The three plants were placed together inside a medium-sized insect cage and ~60 ACP were released (~20 per plant) and left for one month to colonize the plant and reproduce. Adults were removed after two weeks and eggs and nymphs were left to develop. At the end of one month, the new generation of ACP was collected and counted to enumerate the reproduction. An Excel file is attached and shows the three groups. The last group to flush (and the biggest group) is still in the insect room (the experiment was started at the end of April) and the final insect count is happening this week. There were still nymphs developing on some varieties so I left them longer. Also, Inodora was last to flush and is not very vigorous. Finger lime and many of its hybrids did not support ACP well (PFL2-61, MFL2-108, PFL1-3, MFL-10-12). Graft-inoculation: Three of each parent and hybrid were graft inoculated with 'Ca. L. asiaticus' during the first two weeks of April 2023 using infected plant material. Due to the large number of buds required, various sources were used. For example, budwood from HLB+ SugarBelle was used to graft-inoculate the SugarBelle plants, budwood from HLB+ Valencia was used to graft the OLL-8 sweet orange, and HLB+ C. macrophylla was used for finger lime and many FL hybrids. Most plants received 2-3 grafts depending on how thorny the plant was. For Inodora only 2 plants were grafted because they have been slow-growing and were too small still to graft. A third Inodora will be grafted when one is big enough. All plants will be tested by qPCR in October (6 months after grafting). <br><br><b>Publications</b><br>
Target Audience
Nothing Reported
Changes / Problems
Nothing Reported
Training & Professional Development
A student intern from Zamorano university in Honduras was invited for a short term 3 month internship. She participated in the initial evaluation of the Australian lime hybrids. This student also learned the basics of DNA and RNA extraction. She also conducted evaluation of the trees for CaLas titre using real time PCR.
Dissemination Streams
An online only Zoom based research symposium on Finger limes was organised with support from the Citrus research and Educatiuon Center. There were 246 participants. Six speakers from California, Florida and Australia presented on several aspects of finger lime production and new varieties were discussed in this symposium. A survey conducted at the end of the symposium revealed that 78.7% of the participatnts strongly agreed that the symposum was beneficial to them. There were no participants that disagreed but several indicated difficulties in obtaining information on the Australian limes.
Next Reporting Steps
Objective 1: We will continue to screen our rootstock trees for HLB by routinely monitoring for CaLas presence using qPCR. Differential gene expression will also be studied in these trees and EPG technology will be used to understand the probing behaviors of adult ACP. Tree health will be monitored through the evaluation of several physiological parameters (starch content, Total phenolic content (TPC), Proline content, Malondialdehyde (MDA) content in both leaves and roots as well as chlorophyll a, chlorophyll b and total chlorophyll content in the leaves. Objective 2: HLB infected interstock trees will be monitored for bacterial titer accumulation using qPCR and defense gene expression in the HLB susceptible scions will be recorded. Objective 3: All metabolites in the phloem sap will be characterized in the hybrid population and compared to their parents. Additionally, leaf and root metabolites will also be characterized to produce a detailed understanding of the hybrid germplasm. <br><br>
<br>What was accomplished under these goals? Objective 1) Identify the most effective rootstocks with Australian lime genetics for HLB resistance to the scion We propagated all rootstocks proposed in this study. A subset of these rootstocks was stick grafted with HLB infected Valencia scion to determine their ability to protect trees from HLB. Trees with clean HLB free Valencia scions were controls. The initial CaLas Ct values was recorded before grafting (22.25 ± 1.11). Trees were evaluated after six months of grafting. There was no change in the chlorophyll content between the treatments. Total phenolic compounds (TPC) content was determined in leaves to evaluate the induced oxidation response in the cultivars. There were significant differences between the Australian lime rootstocks and controls in TPC levels. There was also variation in the CaLas Ct values and trees ranged from 26.9 to 35. It is expected that a better understanding of the Ct values will be obtained in year 2 of this study. Candidate genes responsible for the production of Cys-rich secretory proteins and Pathogenesis-related 1 (PR1-like) proteins were differentially regulated between the treatments and control. Objective 2) Assess the impact of interstocks in protecting scions against HLB Swingle rootstock was used to produce interstocks. All interstock trees were prepared and subsequently budded with Valencia scion. Budding was delayed due to slow growth of some interstock trees. Trees will be challenged with CaLas in the spring 2023. Objective 3) Understand the role of metabolites in the HLB resistance process. A subset population of the Australian lime hybrids along with their parents were produced. Phloem sap composition from these rooted cutting are being analyzed using GC-MS. We are also letting the trees get larger so that other metabolic analysis can be performed on this population. <br><br><b>Publications</b><br>